From: A nucleotide-independent cyclic nitroxide label for monitoring segmental motions in nucleic acids
Name | Sequence (a) | Notes |
---|---|---|
CS | 5′-dCdTdAdCdT*dG*dCdTdTdTdAdG-3′ | DNA for cyclic ps attachment |
CS_B | 5′-dCdTdAdAdAdGdCdAdGdTdAdG-3′ | Complementary to CS |
S o (b,c,d) | 5′-rCrCrCmUrCdUrArAdA*dC*rC-3′ | RNA for cyclic ps attachment; directs ribozyme into the “open” complex |
S c (b,c) | 5′-rCrCrCrUrCdUrArAdA*dC*rC-3′ | RNA for cyclic ps attachment; directs ribozyme into the “close” complex |
S s (b,c,d) | 5′-rCrCrCmUrCdUrArArAdC*rC-3′ | RNA for single ps attachment; directs ribozyme into the “open” complex |
IGS | 5′-rGrGrUrUrUrGrGrArGrGrG-3′ | Complimentary to S o , S c , or S s |