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Table 2 Probe sequences

From: Stability of double-stranded oligonucleotide DNA with a bulged loop: a microarray study

loop position loop length Probe sequence length (bases)
PM Probe   3'-TTCAATACTACTCATAATTACCAACAACATTAC-5' 33
7 1 3'-TTCAATATCTACTCATAATTACCAACAACATTAC-5' 34
7 2 3'-TTCAATATTCTACTCATAATTACCAACAACATTAC-5' 35
. .   .
. .   .
. . 3'TTCAATATT..CTACTCATAATTACCAACAACATTAC-5' .
7 13 3'-TTCAATATTTTTTTTTTTTTCTACTCATAATTACCAACAACATTAC-5' 46
8 1 3'-TTCAATACTTACTCATAATTACCAACAACATTAC-5' 34
8 2 3'-TTCAATACTTTACTCATAATTACCAACAACATTAC-5' 35
. .   .
. .   .
. .   .
26 13 3'-TTCAATACTACTCATAATTACCAACATTTTTTTTTTTTTACATTAC-5' 46
  1. Synthesized probe sequences (features) on the DNA microarray surface.
  2. Bold letters highlight the additional thymine bases. Altogether, there are 261 different features.