Table 2 List of transmembrane (TM) and non-transmembrane (non-TM) protein chains in complex with lipids
From: Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data
Proteincodea | Protein name | Lipid codeb | Total contactsc | Chainlength |
|---|---|---|---|---|
(a) Transmembrane (TM) protein chains | ||||
1gzm_A | Rhodopsin | PEF | 5 | 329 |
1kqg_B | Formate dehydrogenase-N (Fdn-N) | CDL | 7 | 289 |
1kqg_C | Formate dehydrogenase-N (Fdn-N) | CDL | 5 | 216 |
1m56_D | Cytochrome c oxidase | PEH | 16 | 42 |
1nen_C | Succinate dehydrogenase (SQR) | CDN, EPH | 19 | 129 |
1nen_D | Succinate dehydrogenase (SQR) | CDN | 9 | 113 |
1pp9_Q | Cytochrome bc1 complex | CDL, PEE | 15 | 241 |
1pp9_T | Cytochrome bc1 complex | CDL, PEE | 12 | 76 |
1vf5_D | Cytochrome b6f complex | OPC | 5 | 168 |
1vf5_N | Cytochrome b6f complex | OPC | 6 | 202 |
1x0i_1 | Bacteriorhodopsin (BR) | L3P | 14 | 215 |
1xio_A | Sensory rhodopsin (SR) | PEE | 32 | 217 |
1zoy_D | Succinate:ubiquinone oxidoreductase (SQR) | EPH | 10 | 102 |
2b6o_A | Aquaporin-0 (AQP0) | MC3 | 27 | 235 |
2bl2_I | Vacuolar-type (V-type) sodium ion-pumping adenosine triphosphatase (Na+-ATPase) | LHG | 14 | 156 |
2brd_A | Bacteriorhodopsin (BR) | DPG | 47 | 222 |
2c3e_A | ADP/ATP translocase 1 | CDL | 40 | 293 |
2e75_B | Cytochrome b6f complex | OPC | 13 | 160 |
2e76_F | Cytochrome b6f complex | OPC | 5 | 32 |
2eau_A | Ca2+-ATPase | PTY | 19 | 994 |
2eim_W | Cytochrome c oxidase | CDL | 5 | 58 |
2ein_O | Cytochrome c oxidase | CDL, PEK, PSC | 18 | 226 |
2h89_C | Succinate:ubiquinone oxidoreductase (SQR) | PEE | 5 | 139 |
2hg3_H | Reaction center | CDL, PC9 | 14 | 240 |
2hh1_L | Reaction center | CDL, PC7, PC9 | 10 | 281 |
2hhk_M | Reaction center | CDL, PGK, PGT | 23 | 302 |
2irv_B | Rhomboid protease (GlpG) | PGV | 11 | 179 |
2r9r_B | Voltage-dependent K+ (Kv) channel | PGW | 35 | 386 |
2wll_B | Potassium Channel (Kir) | PLC | 6 | 266 |
2z73_B | Rhodopsin | PC1 | 5 | 347 |
3a7k_A | Halorhodopsin (HR) | L1P, L3P | 33 | 259 |
3abl_N | Cytochrome c oxidase | CDL, PEK, PGV, PSC | 29 | 513 |
3abl_P | Cytochrome c oxidase | CDL, PEK, PGV | 85 | 259 |
3abm_G | Cytochrome c oxidase | CDL, PEK, PGV | 25 | 83 |
3ag4_Z | Cytochrome c oxidase | PGV | 5 | 43 |
3bz2_A | Photosystem II (PSII) | LHG | 6 | 335 |
3bz2_C | Photosystem II (PSII) | LHG | 5 | 447 |
3bz2_D | Photosystem II (PSII) | LHG | 6 | 340 |
3cx5_C | Cytochrome bc1 complex | 6PH, 7PH, 8PE, 9PE, CN3, CN5 | 42 | 385 |
3ddl_B | Xanthorhodopsin (XR) | PCW, PX4 | 6 | 250 |
3eam_C | Bacterial ligand-gated ion channel homologue (GLIC) | PC1 | 23 | 311 |
3egw_C | Nitrate Reductase A (NarGHI) | AGA | 10 | 224 |
3emn_X | Voltage-dependent anion channel (VDAC) 1 | MC3 | 7 | 283 |
3h1j_R | Cytochrome bc1 complex | PEE, PLC | 11 | 196 |
3h1j_W | Cytochrome bc1 complex | PEE, PLC | 9 | 59 |
(b) Non-transmembrane (non-TM) protein chains | ||||
1bp1_A | Bactericidal/permeability-increasing protein (BPI) | PC1 | 47 | 456 |
1bwo_A | Nonspecific lipid transfer protein (ns-LTP1) | LPC | 20 | 90 |
1cqx_B | Flavohemoglobin | DGG | 15 | 403 |
1l8s_B | Phospholipase A2 (PLA2) | LPE | 11 | 124 |
1lsh_A | Lipovitellin (LV-1N, LV-1C) | PLD | 53 | 954 |
1lsh_B | Lipovitellin (LV-2) | PLD | 9 | 174 |
1s9a_B | 4-chlorocatechol 1 | HGP | 13 | 256 |
1tuk_A | Type 2 nonspecific lipid transfer protein (ns-LTP) | PGM | 11 | 67 |
1un8_A | Dihydroxyacetone kinase | MYY | 15 | 542 |
1y9t_A | Lipoprotein MxiM | HHG | 7 | 110 |
1yuc_B | Nuclear receptor liver receptor homolog 1 (LRH-1) | EPH | 22 | 240 |
2azq_A | Catechol 1 | PCF | 9 | 309 |
2e2x_B | Sec14 homology module of neurofibromin | PEV | 22 | 250 |
2obd_A | Cholesteryl ester transfer protein (CETP) | PCW | 41 | 472 |
2qgu_A | Phospholipid-binding protein | PEF | 12 | 179 |
2rak_A | PX-BAR membrane-remodeling unit of sorting nexin 9 (SNX9) | PIB | 5 | 382 |
2rkn_A | Defective in induced resistance 1 protein (DIR1) | LP3 | 22 | 77 |
2vwa_B | Soluble domain of up-regulated in infective sporozoites 3 (UIS3) | PTY | 12 | 100 |
2z0p_D | PH domain of Bruton's tyrosine kinase | 4PT | 13 | 161 |
2ze9_A | Phospholipase D | PD7 | 10 | 504 |
3a7c_A | Extracellular domain of Toll-like receptor 2 (TLR2) | PDK | 13 | 549 |
3bib_X | T cell immunoglobulin mucin protein 4 (TIM-4) | PSF | 9 | 109 |
3cx9_A | Human serum albumin (HSA) | LPX | 17 | 582 |
3e3c_B | Global regulator of LEE repressor (GrlR) | HHG | 15 | 118 |
3k7t_A | 6-hydroxy-L-nicotine oxidase | GP7 | 17 | 425 |
3mdb_C | Arf-GAP with dual PH domain-containing protein 1 | IP9 | 9 | 365 |
3mtx_B | Myeloid differentiation factor 1 (MD-1) | PGT | 18 | 140 |