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Table 2 List of transmembrane (TM) and non-transmembrane (non-TM) protein chains in complex with lipids

From: Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data

Proteincodea Protein name Lipid codeb Total contactsc Chainlength
(a) Transmembrane (TM) protein chains
1gzm_A Rhodopsin PEF 5 329
1kqg_B Formate dehydrogenase-N (Fdn-N) CDL 7 289
1kqg_C Formate dehydrogenase-N (Fdn-N) CDL 5 216
1m56_D Cytochrome c oxidase PEH 16 42
1nen_C Succinate dehydrogenase (SQR) CDN, EPH 19 129
1nen_D Succinate dehydrogenase (SQR) CDN 9 113
1pp9_Q Cytochrome bc1 complex CDL, PEE 15 241
1pp9_T Cytochrome bc1 complex CDL, PEE 12 76
1vf5_D Cytochrome b6f complex OPC 5 168
1vf5_N Cytochrome b6f complex OPC 6 202
1x0i_1 Bacteriorhodopsin (BR) L3P 14 215
1xio_A Sensory rhodopsin (SR) PEE 32 217
1zoy_D Succinate:ubiquinone oxidoreductase (SQR) EPH 10 102
2b6o_A Aquaporin-0 (AQP0) MC3 27 235
2bl2_I Vacuolar-type (V-type) sodium ion-pumping adenosine triphosphatase (Na+-ATPase) LHG 14 156
2brd_A Bacteriorhodopsin (BR) DPG 47 222
2c3e_A ADP/ATP translocase 1 CDL 40 293
2e75_B Cytochrome b6f complex OPC 13 160
2e76_F Cytochrome b6f complex OPC 5 32
2eau_A Ca2+-ATPase PTY 19 994
2eim_W Cytochrome c oxidase CDL 5 58
2ein_O Cytochrome c oxidase CDL, PEK, PSC 18 226
2h89_C Succinate:ubiquinone oxidoreductase (SQR) PEE 5 139
2hg3_H Reaction center CDL, PC9 14 240
2hh1_L Reaction center CDL, PC7, PC9 10 281
2hhk_M Reaction center CDL, PGK, PGT 23 302
2irv_B Rhomboid protease (GlpG) PGV 11 179
2r9r_B Voltage-dependent K+ (Kv) channel PGW 35 386
2wll_B Potassium Channel (Kir) PLC 6 266
2z73_B Rhodopsin PC1 5 347
3a7k_A Halorhodopsin (HR) L1P, L3P 33 259
3abl_N Cytochrome c oxidase CDL, PEK, PGV, PSC 29 513
3abl_P Cytochrome c oxidase CDL, PEK, PGV 85 259
3abm_G Cytochrome c oxidase CDL, PEK, PGV 25 83
3ag4_Z Cytochrome c oxidase PGV 5 43
3bz2_A Photosystem II (PSII) LHG 6 335
3bz2_C Photosystem II (PSII) LHG 5 447
3bz2_D Photosystem II (PSII) LHG 6 340
3cx5_C Cytochrome bc1 complex 6PH, 7PH, 8PE, 9PE, CN3, CN5 42 385
3ddl_B Xanthorhodopsin (XR) PCW, PX4 6 250
3eam_C Bacterial ligand-gated ion channel homologue (GLIC) PC1 23 311
3egw_C Nitrate Reductase A (NarGHI) AGA 10 224
3emn_X Voltage-dependent anion channel (VDAC) 1 MC3 7 283
3h1j_R Cytochrome bc1 complex PEE, PLC 11 196
3h1j_W Cytochrome bc1 complex PEE, PLC 9 59
(b) Non-transmembrane (non-TM) protein chains
1bp1_A Bactericidal/permeability-increasing protein (BPI) PC1 47 456
1bwo_A Nonspecific lipid transfer protein (ns-LTP1) LPC 20 90
1cqx_B Flavohemoglobin DGG 15 403
1l8s_B Phospholipase A2 (PLA2) LPE 11 124
1lsh_A Lipovitellin (LV-1N, LV-1C) PLD 53 954
1lsh_B Lipovitellin (LV-2) PLD 9 174
1s9a_B 4-chlorocatechol 1 HGP 13 256
1tuk_A Type 2 nonspecific lipid transfer protein (ns-LTP) PGM 11 67
1un8_A Dihydroxyacetone kinase MYY 15 542
1y9t_A Lipoprotein MxiM HHG 7 110
1yuc_B Nuclear receptor liver receptor homolog 1 (LRH-1) EPH 22 240
2azq_A Catechol 1 PCF 9 309
2e2x_B Sec14 homology module of neurofibromin PEV 22 250
2obd_A Cholesteryl ester transfer protein (CETP) PCW 41 472
2qgu_A Phospholipid-binding protein PEF 12 179
2rak_A PX-BAR membrane-remodeling unit of sorting nexin 9 (SNX9) PIB 5 382
2rkn_A Defective in induced resistance 1 protein (DIR1) LP3 22 77
2vwa_B Soluble domain of up-regulated in infective sporozoites 3 (UIS3) PTY 12 100
2z0p_D PH domain of Bruton's tyrosine kinase 4PT 13 161
2ze9_A Phospholipase D PD7 10 504
3a7c_A Extracellular domain of Toll-like receptor 2 (TLR2) PDK 13 549
3bib_X T cell immunoglobulin mucin protein 4 (TIM-4) PSF 9 109
3cx9_A Human serum albumin (HSA) LPX 17 582
3e3c_B Global regulator of LEE repressor (GrlR) HHG 15 118
3k7t_A 6-hydroxy-L-nicotine oxidase GP7 17 425
3mdb_C Arf-GAP with dual PH domain-containing protein 1 IP9 9 365
3mtx_B Myeloid differentiation factor 1 (MD-1) PGT 18 140
  1. a Protein ID and chain ID.
  2. b HET IDs of all contacting lipids in the complex.
  3. c Total number of residues with lipid contacts.