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Figure 2 | BMC Biophysics

Figure 2

From: Numerical calculation of protein-ligand binding rates through solution of the Smoluchowski equation using smoothed particle hydrodynamics

Figure 2

Comparison of SPH solutions to the analytical solution for the Smoluchowski equation subject to the Dirichlet BC on both r=R 1 and r=R 2 at steady-state with the relative L 2 errors for different resolutions. Specifically, L 2=0.0666 for Δ x=8Å(green square), L 2=0.0321 for Δ x=4Å(blue circle), and L 2=0.0153 for Δ x=2Å(red triangle).

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BMC Biophysics

ISSN: 2046-1682

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