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Table 1 Experimental and calculated values (via rigid body hydrodynamics and BD simulations) of solution properties of yeast tRNA phe

From: Prediction of solution properties and dynamics of RNAs by means of Brownian dynamics simulation of coarse-grained models: Ribosomal 5S RNA and phenylalanine transfer RNA

Property

Experimental

Rigid body

Brownian

  

hydrodynamicsa

dynamics

D t ×107 (cm 2/s)

7.3 [45]; 7.9 [6]

7.89 [47]

7.8±0.5

τ h (ns)

23.4 [7]

24.2 [47]

23.6±0.8

R g (Å)

23.1 [7]

24.1 [47]

25.1±0.3

  1. aCalculated from PDB file 1EHZ