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Table 2 Experimental and calculated values (via rigid body hydrodynamics and BD simulations) of solution properties of 5S rRNA of E. Coli

From: Prediction of solution properties and dynamics of RNAs by means of Brownian dynamics simulation of coarse-grained models: Ribosomal 5S RNA and phenylalanine transfer RNA

Property

Experimental

Rigid body

Brownian

  

hydrodynamicsa

dynamics

D t ×107 (cm 2/s)

6.00 [20]; 6.2 [48]

6.16 [20]

6.2±0.3

τ h (ns)

107 [20]

79.25 [20]

82±2

R g (Å)

32.7 [48]; 39 [49]

32.98 [20]

39.2±1.5

  1. aCalculated from PDB file IC2X:C