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Table 1 Kinetic model for gene expression with local supercoiling effects

From: A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation

Reaction   Propensity
(1) DNA+RCoilDNA+PCoil+mRNA a o ×RCoil
(2) mRNA→0 γ×mRNA
(3) mRNAProtein b o ×γ×mRNA
(4) Protein→0 d×Protein
(5) GyraseGyrase K1
(6) Gyrase Gyrase K2
(7) Gyrase +PCoilGyrase +RCoil R×PCoil