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Fig. 10 | BMC Biophysics

Fig. 10

From: Role of protein interactions in stabilizing canonical DNA features in simulations of DNA in crowded environments

Fig. 10

Radial distribution functions for water (a), sodium ions (b) and DNA neutralization fractions (c) as a function of distance from the closest heavy atoms of the Drew-Dickerson dodecamer (left) and the GC-rich dodecamer (right). Line colors indicate different protein concentrations (black: 0%, red: 20%, green: 30%, blue: 40%). The horizontal black line in C indicates the counterion condensation value of 76% of the ions to be condensed on the surface of the DNA. Error bars indicate the calculated standard errors from five independent replicate simulations

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