Skip to main content

Table 1 Overview of Simulations

From: Role of protein interactions in stabilizing canonical DNA features in simulations of DNA in crowded environments

DNA

Sequence

Size (Ã…)

Protein

Vol (%)

Protein Conc. (g/L)

Ion Molarity (M)

Ion Molality (mol/kg)

Number of atoms

Simulation Length (μs)

Number of replicates

Drew-Dickerson

54.62

0

0.00

0.45

0.45

16,685-16,720

1

3

Drew-Dickerson

61.02

20

362.49

0.32

0.45

23,958-24,087

1

5

Drew-Dickerson

57.90

30

424.31

0.29

0.45

20,384-20,483

1

5

Drew-Dickerson

53.21

40

546.68

0.24

0.45

15,824-16,019

1

5

GC-rich

56.26

0

0.00

0.43

0.45

18,028-18,059

1

3

GC-rich

61.31

20

357.37

0.32

0.45

24,125-24,445

1

5

GC-rich

57.74

30

427.84

0.29

0.45

20,353-20,377

1

5

GC-rich

53.18

40

547.61

0.24

0.45

15,499-15,904

1

5