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Table 1 Summary of mutations. 6-AU s indicates sensitivity to 6-azauracil

From: Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase

Structural location

Subunit, residue and mutation

Activity in Sc (Tt or Ec)

References

Tt RNAP

Ec RNAP

Sc RNAP II

in vivo

in vitro

Switch residue

β R557

β R678C

Rpb2 R766Q/A

Lethal

(Ec minor defects)

[13, 38]

Switch residue

β N683

β N811

Rpb2 N834A

6-AUs

Very slow, moderate fidelity defect

this paper

Mg2+ binding

β E685

β E813

Rpb2 E836A

6-AUs

Slow, severe fidelity defect (Ec slow elongation)

this paper [40, 42, 48, 49]

Mg2+ binding

β D686

β D814

Rpb2 D837A

Lethal

(Ec slow elongation)

this paper [42, 48]

Switch residue

β N872

β N1099

Rpb2 1013A

 

Slow

this paper

Îł-phosphate

β S878

β S1105

Rpb2 S1019F

6-AUs

Slow, severe fidelity defect

this paper

Îł-phosphate

β R879

β R1106

Rpb2 R1020K/Q

Lethal

 

[43]

Switch residue

β’ D784

β’ D505

Rpb1 D526A

Lethal

 

this paper

H3/H4 hinges, bridge helix

  

Rpb1 G819A, G820A, G823A

Lethal

 

this paper

H3 hinge, bridge helix

β’ G1076

β’ G778

Rpb1 G819A

 

Slow, minor fidelity defect

this paper, [14, 35]

H3 hinge, bridge helix

β’ A1077

β’ A779

Rpb1 G820A

 

Slow, moderate fidelity defect

this paper, [14, 35]

H3/H4 hinges, bridge helix

β’ R1078

β’ R780C

Rpb1 R821Q/A

 

R821Q slow, R821A lethal (Ec termination defects)

this paper, [50][14, 35]

H3/H4 hinges, bridge helix

β’ K1079

β’ K781A

Rpb1 E822

 

(Ec very slow elongation)

[35]

H4 hinge, bridge helix

β’ G1080

β’ G782

Rpb1 G823A

 

Little effect, moderate fidelity defect

this paper, [14, 35]

H1 hinge, trigger loop

  

Rpb1 G1073A, P1075A

Lethal

 

this paper

H1 hinge, trigger loop

β’ G1230

β’ G924

Rpb1 G1073A

 

Slow, strong fidelity defect

this paper, [2]

H1 hinge, trigger loop

β’ E1231

β’ E925

Rpb1 E1074A

 

Fast

this paper, [2]

H1 hinge, trigger loop

β’ P1232

β’ P926

Rpb1 P1075A

Lethal

 

this paper, [2]

H1 hinge, trigger loop

β’ T1234

β’ T928

Rpb1 T1077A

Lethal

 

this paper, [2]

H1 hinge, trigger loop

β’ Q1235A

β’ Q929

Rpb1 Q1078A

Lethal

(Slow, error-prone in Tt)

this paper, [2, 29, 33]

H2 hinge, trigger loop

  

Rpb1 G1097A, P1099A

 

Rapid in elongation, moderate fidelity defect

this paper, [2]