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Table 2 Comparisons of ESDs of multiple V3 loop homology models.

From: Clustering of HIV-1 Subtypes Based on gp120 V3 Loop electrostatic properties

Structural Template Sequence

(Ionic Strength)

Mean ESD

SD

2B4C (0 mM)

0.13

0.04

2QAD (0 mM)

0.10

0.02

2B4C (150 mM)

0.43

0.09

2QAD (150 mM)

0.35

0.06

  1. Each Table entry presents the mean ESD and standard deviation (SD) for 5 homology models generated using Modeller. The modeled structures were constructed by back-prediction using the crystallographic template structures and their sequences (from 2B4C and 2QAD). Electrostatic potentials for each family of 5 homology models were calculated at 0 and 150 mM ionic strength. The goal of this comparison is to assess the effect of structural variability, observed within each family of 5 homology models, on the calculated ESDs.
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BMC Biophysics

ISSN: 2046-1682

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